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Error in illumination correction example pipeline #39
Description
There are 4 piplines in the example. In “ExampleIlluminationCorrection_Example1_AllMethod” pipeline it shows following error,
For reference CP version 3.1.8 & OS is ubuntu,
I request the concerned team to update the example pipeline in the webpage.
This issue is also with reference to a forum question,
https://forum.image.sc/t/error-while-processing-correctilluminationcalculate/30053/2
Activity
AnneCarpenter commentedon Oct 16, 2019
Thanks! Do you mind also pasting the full text of the forum post here in Github? That prevents the problem of the info later becoming unavailable or broken-linked.
lakshmibalasubramanian commentedon Oct 16, 2019
Yes. Here it is,
Hi,
I am using the CellProfiler tutorial images and workflow to explore the illumination correction approach, but I am unable to run it because of the following error message:
Error while processing CorrectIlluminationCalculate:
‘ascii’ codec can’t decode byte 0xff in position 37: ordinal not in range(128)
Does anyone have any idea how this can be fixed? I am new to CellProfiler myself. It is run on the following system: macOS 10.14.6 (18G95)
Many thanks in advance,
Ralitsa
Hi RalitsaMadsen,
@bcimini
Which CellProfiler version are you using??
There are 4 piplines in the examples, which one are you trying?? Because I tried all the 4.
Expect “ExampleIlluminationCorrection_Example1_AllMethod” pipeline rest all seems to work fine. In this case I also encouter the similar error.
Regards,
Lakshmi
6d
If you guys let me know what pipeline(s) fail for which version(s) of CellProfiler, we can figure if it is a bug, or just that the example pipelines need to be updated, in which case you can file an issue 1 letting us know CellProfiler version, OS, which pipeline(s) are having problems, etc.